NiftyPipe Tutorial

List of the different pipelines available:

• Structural images
  • T1 bias correction using N4
  • Full brain parcellation using Geodesic Information Flow
  • STEPS
  • Groupwise Registration

• Functional images
  • Resting State fMRI processing
  • Compute SUVR

• Diffusion images
  • Prerequisite DTI-TK
  • DTI pre-processing
  • NODDI processing
  • Groupwise registration using DTI-TK
  • Groupwise regional analysis
  • Cross-sectional TBSS

• DRC specific pipelines
  • DTI pre-processing for the DRC
  • Full brain parcellation for the DRC