Difference between revisions of "Reg jacobian"
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==Usage== | ==Usage== | ||
<code><pre> | <code><pre> | ||
| + | * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * | ||
| + | Usage: reg_jacobian [OPTIONS]. | ||
| + | * * INPUT * * | ||
| + | -trans <filename> | ||
| + | Filename of the file containing the transformation (mandatory). | ||
| + | -ref <filename> | ||
| + | Filename of the reference image (required if the transformation is a spline parametrisation) | ||
| + | * * OUTPUT * * | ||
| + | -jac <filename> | ||
| + | Filename of the Jacobian determinant map. | ||
| + | -jacM <filename> | ||
| + | Filename of the Jacobian matrix map. (9 or 4 values are stored as a 5D nifti). | ||
| + | -jacL <filename> | ||
| + | Filename of the Log of the Jacobian determinant map. | ||
| + | |||
| + | --version Print current source code git hash key and exit | ||
| + | (3d24c3580a0cd227f30540578b3f84eca9d01e4a) | ||
| + | * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * | ||
</pre></code> | </pre></code> | ||
Latest revision as of 11:34, 3 October 2014
Usage
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Usage: reg_jacobian [OPTIONS].
* * INPUT * *
-trans <filename>
Filename of the file containing the transformation (mandatory).
-ref <filename>
Filename of the reference image (required if the transformation is a spline parametrisation)
* * OUTPUT * *
-jac <filename>
Filename of the Jacobian determinant map.
-jacM <filename>
Filename of the Jacobian matrix map. (9 or 4 values are stored as a 5D nifti).
-jacL <filename>
Filename of the Log of the Jacobian determinant map.
--version Print current source code git hash key and exit
(3d24c3580a0cd227f30540578b3f84eca9d01e4a)
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
