|
|
| Line 1: |
Line 1: |
| − | == Download ==
| |
| − | The code can be easily build using cmake (http://www.cmake.org/). The latest
| |
| − | version can be downloaded from http://www.cmake.org/cmake/resources/software.html
| |
| | | | |
| − | To download the latest version, please check out the code by copying the following line to the terminal:
| |
| − |
| |
| − | <code>
| |
| − | git clone git://git.code.sf.net/p/niftyseg/git niftyseg-git
| |
| − | </code>
| |
| − |
| |
| − | A packaged stable release is also available at this website.
| |
| − |
| |
| − | == Linux & OSX ==
| |
| − | === Build ===
| |
| − | Assuming that the code source are in the source path folder, you will have to first create a new folder, i.e. build path (step 1) and then to change directory to move into that folder (step 2).
| |
| − |
| |
| − | <code>
| |
| − | mkdir build_path
| |
| − |
| |
| − | cd build_path
| |
| − | </code>
| |
| − |
| |
| − | There you will need to call ccmake (step 3a) in order to fill in the
| |
| − | build options. If you don’t want to specify options, we could just use cmake
| |
| − | (step 3b) and the default build values will be used.
| |
| − |
| |
| − | <code>
| |
| − | ccmake source_path
| |
| − |
| |
| − | cmake source_path
| |
| − | </code>
| |
| − |
| |
| − | The main option in the ccmake gui are defined bellow:
| |
| − | <code>
| |
| − | > CMAKE BUILD INSTALL options are Release, RelWithDebInfo or Debug
| |
| − |
| |
| − | > INSTALL_PRIORS Will install the population atlas for the segmentation pipeline
| |
| − |
| |
| − | > INSTALL_PRIORS_DIRECTORY Directory where the population atlas is going to be installed
| |
| − |
| |
| − | > INSTALL_NIFTYREG Will fetch and automatically configure and install the niftireg package.
| |
| − | </code>
| |
| − |
| |
| − | Once all the flags are properly filled in, just press the ”c” to configure the Make-
| |
| − | file and then the ”g” key to generate them.
| |
| − |
| |
| − | === Install ===
| |
| − | In the prompt, you just have to make (step 4) first and then make install (step 5).
| |
| − |
| |
| − | <code>
| |
| − | make
| |
| − |
| |
| − | make install
| |
| − | </code>
| |
| − |
| |
| − | == Windows ==
| |
| − | === Build ===
| |
| − | The building process is the following:
| |
| − | *Get the source
| |
| − | *Create a new directory for the build: "niftyseg-build"
| |
| − | *Launch CMake-Gui, set the source path to "niftyseg" and the build path to "niftyseg-build" then hit configure
| |
| − | **Cmake will prompt you to select the generator, which means you'll need to select the Visual Studio version you have installed earlier
| |
| − | **Make sure the Use OpenMP option is enabled.
| |
| − | **Set the CMAKE_INSTALL_PREFIX to the folder where you want to install NiftySeg.
| |
| − | **Note, that if you want to install NiftySeg under Program Files, you'll need to create the folder yourself and explicitly apply full write permissions.
| |
| − | *Once the flags are set, hit configure and generate. This will generate the Visual Studio project files.
| |
| − | === Install ===
| |
| − | *Go to "niftyseg-build", and launch NiftySeg.sln. This will start Visual Studio.
| |
| − | *In Visual Studio select build type, for generic use select Release and build the project (hit F7).
| |
| − | *Once the build finished Select and run the Install task (Right Click on Install > Project Only > Build only Install). This will install NiftySeg to the folder you selected earlier.
| |
| − | *Probably you'll want to add the install folder to your system path.
| |
