Difference between revisions of "Prerequisite DTI-TK"
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| − | In order to use the | + | In order to use the [[Groupwise registration using DTI-TK | DTI groupwise]] or [[Cross-sectional TBSS | TBSS]] pipeline, the DTITK package has to be installed on the system. You can find more information about DTITK [http://dti-tk.sourceforge.net/pmwiki/pmwiki.php here]. |
| − | On the computer science cluster, it can be found here: <code> | + | On the computer science cluster, it can be found here: <code>/share/apps/cmic/dtitk</code> |
| − | On the DRC network, it can be found: <code> | + | On the DRC network, it can be found: <code>/var/drc/software/64bit/dtitk-20120815</code> |
Before running any NiftyPipe pipeline that uses DTITK, you need to specify the <code>DTITK_ROOT</code> | Before running any NiftyPipe pipeline that uses DTITK, you need to specify the <code>DTITK_ROOT</code> | ||
This can be done using: | This can be done using: | ||
<pre> | <pre> | ||
| − | CS cluster: export DTITK_ROOT= | + | CS cluster: export DTITK_ROOT=/share/apps/cmic/dtitk |
| − | DRC network: export DTITK_ROOT= | + | DRC network: export DTITK_ROOT=/var/drc/software/64bit/dtitk-20120815 |
</pre> | </pre> | ||
Latest revision as of 08:08, 27 August 2015
In order to use the DTI groupwise or TBSS pipeline, the DTITK package has to be installed on the system. You can find more information about DTITK here.
On the computer science cluster, it can be found here: /share/apps/cmic/dtitk
On the DRC network, it can be found: /var/drc/software/64bit/dtitk-20120815
Before running any NiftyPipe pipeline that uses DTITK, you need to specify the DTITK_ROOT
This can be done using:
CS cluster: export DTITK_ROOT=/share/apps/cmic/dtitk DRC network: export DTITK_ROOT=/var/drc/software/64bit/dtitk-20120815
