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| − | == Download ==
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| − | The code can be easily build using cmake (http://www.cmake.org/). The latest
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| − | version can be downloaded from http://www.cmake.org/cmake/resources/software.html
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| − | To download the latest version, please check out the code by copying the following line to the terminal:
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| − |
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| − | <code>
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| − | git clone git://git.code.sf.net/p/niftyseg/git niftyseg-git
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| − | </code>
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| − | A packaged stable release is also available at this website.
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| − |
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| − | = Linux & OSX =
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| − | == Build (Linux & OSX) ==
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| − | Assuming that the code source are in the source path folder, you will have to first create a new folder, i.e. build path (step 1) and then to change directory to move into that folder (step 2).
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| − |
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| − | <code>
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| − | mkdir build path
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| − | cd build path
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| − | </code>
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| − | There you will need to call ccmake (step 3a) in order to fill in the
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| − | build options. If you don’t want to specify options, we could just use cmake
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| − | (step 3b) and the default build values will be used.
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| − |
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| − | <code>
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| − | ccmake source path
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| − | cmake source path
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| − | </code>
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| − |
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| − | The main option in the ccmake gui are defined bellow:
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| − | <code>
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| − | > CMAKE BUILD INSTALL options are Release, RelWithDebInfo or Debug
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| − | > INSTALL_PRIORS Will install the population atlas for the segmentation pipeline
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| − | > INSTALL_PRIORS_DIRECTORY Directory where the population atlas is going to be installed
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| − | > INSTALL_NIFTYREG Will fetch and automatically configure and install the niftireg package.
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| − | </code>
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| − | Once all the flags are properly filled in, just press the ”c” to configure the Make-
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| − | file and then the ”g” key to generate them.
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| − |
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| − | == Install (Linux & OSX) ==
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| − | In the prompt, you just have to make (step 4) first and then make install (step 5).
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| − | <code>
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| − | make
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| − | make install
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| − | </code>
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| − |
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| − | == Build (Windows) ==
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| − | The building process is the following:
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| − | *Get the source
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| − | *You'll then need to create a new directory for the build: "niftyreg-build"
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| − | *You launch CMake-Gui, you set the source path to "niftyreg" and the build path to "niftyreg-build" then hit configure
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| − | *Cmake will prompt you to select the generator, which means you'll need to select the Visual Studio version you have installed earlier
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| − | *CMake will run for about a minute, then it will present you with some configuration options. Make sure the Use OpenMP option is enabled.
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| − | *Set the CMAKE_INSTALL_PREFIX to the folder where you want to install NiftySeg.
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| − | **Note, that if you want to install NiftySeg under Program Files, you'll need to create the folder yourself and explicitly apply full permissions to write for your user.
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| − | *Once the flags are set then hit configure and generate. Cmake will generate you the Visual Studio project files.
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| − | == Install (Windows) ==
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| − | *Go to "niftyseg-build", and launch NiftySeg.sln. Consequently Visual Studio will start up.
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| − | *In Visual Studio select build type, for generic use select Release and build the project (hit F7). VS will run for a couple minutes.
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| − | *Once the build finished Select and run the Install task (Right Click on Install > Project Only > Build only Install). This will install NiftySeg to the folder you selected earlier.
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| − | *Probably you'll want to add the install folder to your system path.
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