It is a challenging endeavour to extract the mesh of a whole brain, any specific brain tissue or any particular area from a magnetic resonance image.
With the suppport of 3D-MED, we have developed a pipeline based on GIF that will help you to do just that.
You only need to choose the tissue that you want to extract and upload a T1-weighted image in NIFTI format. We will compute it, and send an email with STL file ready for printing in any 3D printer,
it will include the result as a NIFTI as well. If you want a personalised set of regions you can choose them from this list.
The results will be sent to the following e-mail address:
Choose a tissue mask:
Choose the region of interest specificying a number, or a set of numbers split by commas (e.g.: 25,35,49), from this list:
Select files (Maximum of 5 files with 100 Mb each in .nii or nii.gz formats):
Ferran Prados, M. Jorge Cardoso, Ninon Burgos, Claudia AM Wheeler-Kingshott, Sebastien Ourselin. NiftyWeb: web based platform for image processing on the cloud. International Society for Magnetic Resonance in Medicine (ISMRM) 24th Scientific Meeting and Exhibition - Singapore 2016
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