Journal Club

The TIG Journal club will meet weekly on Wednesdays, 4.30pm, MPEB 2.14 unless otherwise noted. 

 

UPCOMING:

Mar 1  - Peter Loic - Automating and Assisting Image Segmentation with Decision Forests

Mar 8  - Wenqi Li

Mar 15 - Maria Ruxandra Robu

Mar 22 - Wenfeng Xia

Mar 29 - Dzhoshkun Shakir

Apr 5 - Efthymios Maneas

Apr 26 - Guotai Wang

 


PAPER STACK:

If you have an interesting paper that you think could be presented at the journal club, please send an email and it will be added to the stack: 

- Namburete et al. Learning-based prediction of gestational age from ultrasound images of the fetal brain. Medical Image Analysis (21), 2015.
- Dahdouh et al. Segmentation of embryonic and fetal 3D ultrasound images based on pixel intensity distributions and shape priors. Medical Image Analysis (2015)


PAST PRESENTATIONS:

2016-2017
2015-2016

2014-2015

 

  Academic Year 2016-2017

Feb 1, 2017

Presenter: Tom Doel

Topic: (Don't be afraid of) collaborative software development.

 

Jan 25, 2017

SPIE Photonics West Rehersal

 

Jan 18, 2017

Presenter: Mirek Janatka
Paper Title: Stereoscopic Motion Magnification in Minimally-Invasive Robotic Prostatectomy - McLeod et al.

 

Dec 14, 2016

Presenter:Evangelos Mazomenos

Paper Title: Fast Catheter Segmentation From Echocardiographic Sequences Based on Segmentation From Corresponding X-Ray Fluoroscopy for Cardiac Catheterization Interventions. - Wu et al.

 

Nov 23, 2016
Presenter: Martin Kochan

Paper title: PMBP: PatchMatch belief propagation for correspondence field estimation. - Besse et al.

 

Nov 9, 2016

MICCAI Wrap-up 2

Presented: Michael Ebner
Paper title: Multi-Input Cardiac Image Super-Resolution using Convolutional Neural Networks.

Presented: Ester Bonmatí
Paper title: Bioelectric navigation: a new paradigm for intravascular device guidance.

Presented: Martin Kochan
Paper title: Model-Based Regularisation for Respiratory Motion Estimation with Sparse Features in Image-Guided Interventions.

Presented: Rachel Sparks
Paper title: Tensor-Based Graph-Cut in Riemannian Metric Space and Its Application to Renal Artery Segmentation.

 

Nov 2, 2016

MICCAI Wrap-up

Presented: Maria Zuluaga
Paper title: Real-time standard scan plane detection and localisation in fetal ultrasound using fully convolutional neural networks.

Presented: Luis García-Peraza 
Paper title: Regressing Heatmaps for Multiple Landmark Localization Using CNNs.

Presented: Guotai Wang
Paper title: Learning-Based Multimodal Image Registration for Prostate Cancer Radiation Therapy.

Presented: Efthymios Maneas
Paper title: Vascular Registration in Photoacoustic Imaging by Low-Rank Alignment via Foreground, Background and Complement Decomposition.

 

  Academic year 2015-2016

May 4, 2016
Presented: Luis García-Peraza 
Paper title: Fully Convolutional Networks for Semantic Segmentation. - Long et al.


April 6, 2016
IPEM Rehearsal

 

March 23, 2016
Presenter: Dzhoshkun Shakir
Paper title: Software development practices in academia: A case study comparison. Groen et al.

 

March 2, 2016
Presenter: Guotai Wang
Title: Overview on deep learning

 

Feb. 24, 2016
Presenter: Efthymios Maneas
Paper title: Real-time Visual Analysis of Microvascular Blood Flow for Critical Care - Liu et al.

 

Feb. 10, 2016
Presenter: Michael Ebner
Paper title: Super-resolution reconstruction in frequency, image and wavelet domains to reduce through-plane partial voluming in MRI. Gholipour et al.
Slides can be found here.

 

Feb 3, 2016
Presenter: Rachel Sparks
Paper title: Treatment Planning and Image Guidance for Radiofrequency Ablation of Large Tumors. Ren et al.

Jan. 27, 2016
Presenter: François Chadebecq
Paper title: Shape and Reflectance Estimation in the Wild. Oxholm et al.

Jan 20, 2016
Presenter: Sebastiano Ferraris
Paper title: An Overlap Invariant Entropy Measure of 3D Medical Image AlignmentC. Studholme et al.

 

Jan 13, 2016
Presenter: Marcel Tella Amo
Paper title: Self-contained image mapping of placental vasculature in 3D ultrasound-guided fetoscopyYang et al.

Dec 2, 2015
Presenter: Wenqi Li
Title: Analysis of Colorectal Polyps in Optical Projection Tomography

 

Nov 25, 2015
Presenter: Maria A. Zuluaga
Paper title: Image-guided Interventions: Technology Review and Clinical Applications - K. Cleary and T.M. Peters (2010) 
Slides can be found here

 

 Academic year 2014-2015

June 17, 2015 
Presenter: Sebastiano Ferraris
Paper title: Comparing algorithms for diffeomorphic registration: Stationary LDDMM and Diffeomorphic Demons. Hernandez et al.
Slides can be found here.

 

June 10,2015 -

Presenter: Michael Ebner
Paper Title: Reconstruction of fetal brain MRI with intensity matching and complete outlier removal. Kuklisova-Murgasova et al.
Slides can be found here.

 

April 29, 2015

Presenter: M. Jorge Cardoso
Paper Title: An introduction to the wonderful world of label fusion
Click here for presentation

 

April 15th, 2015
Presenter: François Chadebecq 
Paper title: Non-Rigid Shape from Motion for Isometric Surfaces using Infinitesimal Planarity. Chhatkuli et al.

March 25th, 2015
Presenter: Dzhoshkun Shakir
Paper title: What language to you need for Hawaii?, Series on Software Design

Link: http://benchmarksgame.alioth.debian.org

Click here for presentation

 

March 18th, 2015
Presenter: Tom Doel
Paper title: Clinical software Design, Series on Software Design

Click here for the presentation

 

March 11th, 2015
Presenter: Johannes Totz
Paper title: Comparative evaluation of HD 2D/3D laparoscopic monitors and benchmarking to a theoretically ideal 3D pesudodisplay: even well-experienced laparoscopists perfor better with 3D, Wilhelm et al.

Link: http://link.springer.com/article/10.1007%2Fs00464-014-3487-9
Click here for the presentation

 

February 9th, 2015
Presenter: Luis Carlos García
Paper title: Feature Classification for Tracking Articulated Surgical Tools , Reiter et al
Link: http://www1.cs.columbia.edu/~allen/PAPERS/MICCAI12.pdf
Click here for the presentation

 

February 4th, 2015
Presenter: Ioannis Kourouklides
Paper title: 
Link:
Click here for the presentation

 

January 28th, 2015
Presenter: Maria A. Zuluaga
Paper title: Real-Time Segmentation and Recognition of Surgical Tasks in Cataract Surgery Videos, Quellec et al.
Link: http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6860246&source=tocalert
MedIA paper: http://www.sciencedirect.com/science/article/pii/S1361841514000309
Click here for the presentation

 

December 11th, 2014
Presenter: Guotai Wang
Paper: Real-time ultrasound transduce localization in fluoroscopy images by transfer learning from synthetic training data, Heimann et al.
Link: http://www.sciencedirect.com/science/article/pii/S1361841514000619
Click here for the presentation

 

December 4th, 2014
Presenter: Sebastiano Ferraris
Paper: A new algorithm for the computation of the group logarithm of diffeomorphisims, Bossa & Olmos.
Link: http://www-sop.inria.fr/asclepios/events/MFCA08/Proceedings/mfca08_1_2.pdf
Click here for the presentation.

 

November 27, 2014 
Presenter: Rachel Sparks

Paper: Automatic Deformable MR-Ultrasound Registration for Image-Guided Neurosurgery, Rivas et al.
Link: http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6901264

Click here for the presentation.

 

November 20, 2014 
Presenter: Efthymios Maneas

Paper: Simultaneous functional photoacoustic and ultrasonic endoscopy of internal organs in vivo, Yang et al.
Link: http://www.nature.com/nm/journal/v18/n8/full/nm.2823.html

 

November 13, 2014 
Presenter: Marcel Tella Amo
Paper title:  Probabilistic Tracking of Affine-Invariant Anisotropic Regions, Giannarou et al.

Paper link: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6175907

 

November 6, 2014 
Presenter: Martin Kochan
Paper title:  Cortical surface shift estimation using stereovision and optical flow motion tracking via projection image registration, Ji et al.

Paper link: http://www.sciencedirect.com/science/article/pii/S136184151400108X
Click here for the presentation. 

 

October 30, 2014 
Presenter: George Dwyer
Paper title:  An Endoscope with 2DOFs Steering of Coaxial Nd: YAG Laser Beam for Fetal Surgery, Yamanaka et al. and Automatic Tracking Algorithm in Coaxial Near-Infrared Laser Ablation Endoscope for Fetus Surgery, Hu et al.
Paper links: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5623346  -  http://www.tandfonline.com/doi/full/10.1080/15599612.2014.916016#.VFDahksQtG4
Click here for the presentation. 

 

October 23, 2014
Presenter: Gustavo Dos Santos
Paper title: Vision-based endoscope tracking for 3D ultrasound image-guided surgical navigation. Yang et al.
Paper link: http://www.sciencedirect.com/science/article/pii/S0895611114001475
Click here for the presentation.